Publications

2017

  • Hebing Chen, Shuai Jiang, Zhuo Zhang, Hao Li, Yiming Lu*, Xiaochen Bo*. Exploring spatially adjacent TFBS-clustered regions with Hi-C data. Bioinformatics, 2017. (May), 1–3.
  • Yiming Lu, Chen Quan, Hebing Chen*, Xiaochen Bo*, Chenggang Zhang*. 3DSNP: a database for linking human noncoding SNPs to their three-dimensional interacting genes. Nucleic Acids Research, 2017. 45(D1), D643–D649.

2016

  • Yiming Lu, Guangyu Shan, Jiguo Xue, Changsheng Chen*, Chenggang Zhang*. Defining the multivalent functions of CTCF from chromatin state and three-dimensional chromatin interactions. Nucleic Acids Research, 2016, 44(13), 6200–6212.
  • Zhe Zhang, Ke Huang, Chenglei Gu, Luyang Zhao, Nan Wang, Xiaolei Wang, Dongsheng Zhao, Chenggang Zhang*, Yiming Lu* & Yuanguang Meng*. Molecular Subtyping of Serous Ovarian Cancer Based on Multi-omics Data. Scientific Reports, 2016, 6:26001.
  • Guangyu Shan, Yiming Lu, Bo Min, Wubin Qu, Chenggang Zhang. A MeSH-based text mining method for identifying novel prebiotics. Medicine, 2016. 95(49), e5585.
  • Yan Gao, Yiming Lu, Jianming Yi, Zhihui Li, Dawen Gao, Zhoulong Yu, Tongning Wu, Chenggang Zhang*. A Genome-Wide mRNA Expression Profile in Caenorhabditis elegans under Prolonged Exposure to 1750MHz Radiofrequency Fields. Plos One, 2016. 11(1), e0147273.

Before 2016

  • Yiming Lu, Wubin Qu, Guangyu Shan, Chenggang Zhang*. DELTA: A Distal Enhancer Locating Tool Based on AdaBoost Algorithm and Shape Features of Chromatin Modifications. Plos One, 2015, 10(6), e0130622.
  • Yiming Lu, Wubin Qu, Bo Min, Zheyan Liu, Changsheng Chen*, and Chenggang Zhang*. Modeling epigenetic regulation of gene expression in twelve human cell types reveals combinatorial patterns of cell-type-specific genes. IET Systems Biology, 2014. 8(3), 104–15.  (Conference paper)
  • Yiming Lu, Yanchun Zhang, Xingyi Hang, Wubin Qu, Gert Lubec, Changsheng Chen*, and Chenggang Zhang*. Genome-wide computational identification of bicistronic mRNA in humans. Amino acids, 2013. 44(2):597–606.
  • Yiming Lu, Yang Zhou, Wubin Qu, Minghua Deng, and Chenggang Zhang*. A Lasso regression model for the construction of microRNA-target regulatory networks. Bioinformatics, 2011. 27(17):2406–2413.